Table of Contents
Definition / general | Essential features | Terminology | Diagrams / tables | In vitro diagnostics versus laboratory developed tests | History of laboratory developed tests | Consideration / reasoning of FDA | 9 months leading to the Final Rule in the U.S. | International regulation of LDTs | FDA Final Rule on LDTs | Additional references | Board review style question #1 | Board review style answer #1 | Board review style question #2 | Board review style answer #2Cite this page: Larsen MP, Tsang P. Laboratory developed tests. PathologyOutlines.com website. https://www.pathologyoutlines.com/topic/managementlabdevelopedtests.html. Accessed April 2nd, 2025.
Definition / general
- On September 29, 2023, the U.S. Food and Drug Administration (FDA) announced a new proposed rule on laboratory developed tests (LDTs) to increase oversight for patient safety
- It is important to understand the historical regulatory background and basis for this proposed change to assess its implications for pathology practice
Essential features
- Laboratory developed tests extend testing of specimens and populations outside of the manufacturer's instructions or offer unique tests
- Applications include testing rare diseases and complicated conditions for which FDA approved testing is not available, thus promoting testing innovation
- The FDA has exercised general enforcement discretion of LDTs, meaning that the Centers for Medicare & Medicaid Services (CMS) through the Clinical Laboratory Improvement Act (CLIA) '88 has been evaluating these assays during laboratory inspections
- Due to changes in the LDT landscape since it was defined in 1976, the FDA proposes to increase oversight and regulation of these tests to promote patient safety
- The pathology community believes adequate oversight and regulation already exist and is concerned that the proposed additional FDA oversight will
- Limit availability of testing to patients and populations currently benefiting from access to LDTs
- Suppress innovation
- Delay diagnosis of seriously ill patients
- Add significant costs to produce and administer LDTs
- Further healthcare inequity
Terminology
- Laboratory developed test: in vitro diagnostic (IVD) test intended for clinical use and is designed, manufactured and used within a single CLIA certified laboratory that meets regulatory requirements for high complexity testing (Federal Register: Framework for Regulatory Oversight of Laboratory Developed Tests; Draft Guidance for Industry, Food and Drug Administration Staff, and Clinical Laboratories; Availability [Accessed 4 March 2024])
- In vitro diagnostics: tests performed on blood or tissue taken from the human body that can detect disease, conditions and infections that are conducted in test tubes using laboratory equipment
- Verifying Accurate Leading Edge In Vitro Clinical Tests (IVCT) Development Act (VALID Act): an earlier attempt by the FDA to regulate laboratory testing
- Clinical Laboratory Improvement Act (CLIA) of 1967: first CMS regulation of clinical laboratories, outlining quality standards and federal oversight
- CLIA '88: improved CMS oversight of all clinical laboratories, introducing the categories of test complexity and metrics to assure quality performance
- Additional amendments were passed in 1997, 2003 and 2012 but the law continues to be referred to as CLIA '88
- 2003 revision described LDT as not subject to FDA regulation or approval
- Federal Food, Drug and Cosmetic Act (FFDCA, FDCA or FD&C): laws passed by U.S. Congress in 1938 granting the FDA authority to oversee the safety of food, drugs, medical devices and cosmetics
- 510(k): the section that allows for clearance of class II medical devices
- 515: the description of class III device approval
Diagrams / tables
Images hosted on other servers:
Comparison: FDA versus CLIA / CMS oversight of testing (FDA: Draft Guidance for Industry, Food and Drug Administration Staff, and Clinical Laboratories - Framework for Regulatory Oversight of Laboratory Developed Tests (LDTs) [Accessed 4 March 2024])
U.S. FDA oversight | CLIA '88 / CMS oversight |
Focus on devices themselves and how they perform | Focus on laboratory processes to use devices, not device quality |
Review of analytic validity performed before test may be used on patients | Review of analytic validity performed during a 2 year inspection cycle; test may be in use for 2 years before assessment of data and test use |
Analytic validity large in scope with thousands to tens of thousands of data points | Analytic validity may be performed on the smallest number of patients required for statistical significance |
Requires assessment of clinical validity / utility of testing | Does not require clinical validity / utility |
Review requires assessment of patient safety | Review does not require assessment of patient safety |
Required demonstration of effectiveness in determining presence / absence of condition being assessed | No required demonstration of effectiveness in determining presence / absence of condition being assessed |
Requires adverse event reporting to identify inaccurate, unsafe and ineffective devices | Does not require adverse event reporting |
Requires removal of unsafe devices from market | Does not remove devices from the market |
In vitro diagnostics versus laboratory developed tests
- In vitro diagnostics
- Commercially manufactured
- Majority of all laboratory testing
- Examples: comprehensive metabolic panel, complete blood count
- Laboratory developed tests
- Developed by high complexity CLIA laboratories overseen by trained medical directors and scientists
- Developed to fill unmet diagnostic or patient needs
- Examples
- Panels to monitor immunosuppressants after transplantation
- Comprehensive toxicology panels
- Newborn screening for early diagnosis of serious treatable conditions
- Genetic tests (e.g., next generation sequencing) to detect mutations in cancer (excluding companion diagnostics)
- Syndromic microbiology PCR testing
- Most immunohistochemical stains used in anatomic pathology
- Flow cytometry markers for lymphoma / leukemia
- Reference: J Mass Spectrom Adv Clin Lab 2023;28:67
History of laboratory developed tests
- 1976 Medical Device Amendments Act: rule established by Congress, amended Food, Drug and Cosmetic (FD&C) Act to create a system for FDA regulation of medical devices used in humans, specifically including in vitro reagents (FDA: Laboratory Developed Tests [Accessed 7 March 2024])
- FDA established a specific definition for LDT and claimed regulatory authority
- Manufactured in small volume
- Used locally, at single CLIA certified lab
- Diagnose rare diseases
- Manual methods and skilled laboratory personnel
- FDA utilized general enforcement discretion approach for LDT
- Deferred oversight and regulation
- Did not strictly apply FDA standard oversight / approval process to LDT
- 510K approvals and data submissions not required
- FDA established a specific definition for LDT and claimed regulatory authority
- October 2014: FDA guidance document issued suggests that labs performing LDTs should comply with same FDA requirements as manufacturers
- Data submission for premarket review
- Continuous postmarket safety surveillance
- November 2016: FDA guidance document withdrawn
- Strong opposition from the laboratory community
- Concern that regulation would prevent laboratories from providing important testing in a timely manner
- VALID Act, 2018 - 2021: multiple versions proposed in an attempt to find a compromise between the FDA and laboratory providers
- Proposed risk based framework for new category, in vitro clinical tests (IVCT), to include both IVD and LDT
- High risk tests require premarket review
- Low risk tests exempt from premarket review
- Grandfathering of existing LDTs if certain criteria are met
- Opposition from the laboratory community
- Laboratory is already heavily regulated
- Restriction of patient access to necessary care
- Suppression of innovation
- Duplicates CLIA defined regulations imposed by CMS through the College of American Pathologists (CAP) / The Joint Commission (TJC) inspection processes and specific state (e.g., New York) requirements
- Definitions unclear
- Discretion left to the Secretary of State would produce an unpredictable future
- Subject matter experts not involved in accreditation
- FDA did not have resources to meet this obligation
- Demonstrated by challenges of EUA (emergency use authorization) during COVID-19 for testing
- Lack of review of non-COVID FDA submissions during Public Health Emergency
- Was proposed as part of the Consolidated Appropriations Act of 2023 but was ultimately withdrawn from that bill, which was passed on December 20, 2022
- Proposed risk based framework for new category, in vitro clinical tests (IVCT), to include both IVD and LDT
- FDA's new proposed rule on LDTs, September 29, 2023 (Regulations.gov: Medical Devices; Laboratory Developed Tests [Accessed 4 March 2024])
- Above website includes the rule itself and supporting documents
- Comments / responses from individuals, professional associations and manufacturers
- Update the definition of in vitro diagnostic products to make explicit
- IVDs are devices under the Food, Drug and Cosmetics Act
- Clinical laboratory is considered the manufacturer of the IVD / LDT
- Intention to phase out general enforcement discretion approach to LDT
- IVDs manufactured by a laboratory to fall under the same enforcement approach as other IVDs
- Require preapproval data submission
- Analytic, effectiveness and safety assessment submission prior to use
- Continuous data submission for monitoring of test performance and safety
- Better protect the public by assuring safety and effectiveness
- Nuts and bolts of proposal
- Will require establishment of a new division of FDA
- Will require substantial financial investment in FDA
- Phase out of general enforcement discretion to take at least 4 years
- Stratify LDT to evaluate high risk tests first
- Includes both modifications of approved IVD (for patient age, matrix, etc.) and new tests
- LDT to be excluded from proposal
- Those that follow the original 1976 definition
- HLA tests for transplantation and histocompatibility
- Forensic testing
- Public health surveillance testing (not for individual patient diagnosis)
- Public comment period ended December 4, 2023
- Over 6,000 comments received
Consideration / reasoning of FDA
- Current LDT landscape
- Today's tests more complex scientifically and technically than in 1976
- Little difference from other manufactured IVD under FDA oversight
- Being used outside local community
- Marketed nationwide
- Widely screen for disease or diagnose serious medical conditions
- Avoid FDA submission / approval / renewal
- A new assay can then be launched faster and at a lower cost
- Need to demonstrate clinical utility / efficacy
- Tests significantly impact larger groups of patients
- Growing sector of testing market
- Used in complicated areas of medicine: precision medicine, cancer diagnostics and prognostics
- Some algorithms and scores for interpretation are not transparent about the basis for scoring
- Directly influence drug treatment and choice
- Articles cited by the FDA indicating that current LDTs may be causing patient harm
- ProPublica: They Trusted Their Prenatal Test. They Didn't Know the Industry Is an Unregulated "Wild West." [Accessed 4 March 2024]
- ProPublica: The COVID Testing Company That Missed 96% of Cases [Accessed 4 March 2024]
- MedScape: Blood Test Positive for Cancer, But Is There Really a Tumor? [Accessed 4 March 2024]
- Nat Commun 2019;10:3328
- Today's tests more complex scientifically and technically than in 1976
9 months leading to the Final Rule in the U.S.
- FDA released a statement jointly with CMS in January 2024, signaling its firm stance on increased LDT oversight (FDA: FDA and CMS - Americans Deserve Accurate and Reliable Diagnostic Tests, Wherever They Are Made [Accessed 4 March 2024])
- FDA intended to release the final rule in Q2 2024 under an expedited timeline (OIRA: Medical Devices; Laboratory Developed Tests [Accessed 4 March 2024])
- Comments and concerns voiced by laboratory community similar to those of VALID Act
- Laboratory is already heavily regulated
- Restriction of patient access to necessary care
- Suppression of innovation
- Definitions unclear
- Subject matter experts not involved in accreditation
- FDA does not have resources to meet this obligation
- Demonstrated by challenges of EUA (emergency use authorization) approvals during COVID-19
- Lack of progress of non-COVID-19 testing applications during Public Health Emergency
- Cost of setting up a new department of FDA for this oversight has been underestimated
- Cost of this oversight to the performing laboratories has been underestimated
- Costs include administrative time, data collection and submission of data to FDA
- Will prevent smaller hospitals and systems from offering LDT
- Limitations in testing will adversely affect already disadvantaged populations and some patients with rare serious disease
- Examples of specific pathology professional society responses
- College of American Pathologists response (CAP: Re: FDA Proposed Rule, "Medical Devices; Laboratory Developed Tests" - Docket No. FDA-2023-N-2177 [Accessed 4 March 2024])
- LDTs play a critical role in patient care
- Innovative tests that may be the only tests of their kind
- Promote innovation and patient safety
- Propose an oversight framework with a stratified approach to balance regulation by FDA and CMS without stifling innovation or patient access
- Some LDTs represent modified manufacturers' tests because the population is too small (pediatrics, rare diseases) or because an FDA approved test is not available
- Some LDTs exist because manufacturers do not have a product for an older instrument or new scientific data, such as antimicrobial breakpoints
- American Society of Clinical Pathology response (ASCP: RE: "Medical Devices; Laboratory Developed Tests" [Accessed 4 March 2024])
- Majority of LDTs provide good results and strongly support patient care
- The limited number of poorly performing LDTs do not require an extraordinary level of regulatory oversight proposed
- Challenges for the laboratory community include
- Financial and administrative burden too high for most laboratories to bear
- Will undermine patient access to testing needed for optimum diagnosis and treatment
- Stifles the innovation that laboratories should be encouraged to develop
- LDTs are often the first diagnostics for infectious diseases, public health emergencies and cancers
- LDTs that are modified under CLIA standards allow testing on alternative specimen types when supplies are not available and are customized to patient populations
- Only about 1% of laboratory testing is done with LDTs
- Approximately 120 million tests per year
- Current evidence of poor performance is limited and sporadic, suggesting an absence of systematic issues with current oversight
- FDA has limited ability to review submissions in a timely manner
- Could delay standard test approvals while getting LDTs evaluated
- Some LDTs diagnose patients with medical emergencies that need prompt diagnosis and could cause harm if not available
- Digital Pathology Association response (Regulations.gov: Comment from Digital Pathology Association [Accessed 4 March 2024])
- Digital pathology relies on robustly validated LDTs to support adoption and use for safe patient care, thus can contribute meaningful experience
- Not every result with an LDT will be accurate but
- Results of IVD are not always accurate
- Sensitivity and specificity of IVD are often less than 100%
- Consider the benefit of LDT: remote use of LDT for assessment of thyroid fine needle aspiration quality in over 600 procedures
- Saved 236 hours of procedure time per year
- Reduced the number of needlesticks needed for diagnosis by 33%, 1 stick per patient
- Substantial cost and administrative time required to comply with device requirements
- Will reduce testing compendiums significantly
- FDA has underestimated the number of tests to be withdrawn
- Evidence of risks of LDT is often published in newspapers, patent issues, lawsuits and anecdotes rather than peer reviewed and systematic research reviews
- EUA situation during COVID-19 cannot be used to justify oversight of LDT as this was a unique experience
- Oversight rule will overburden the FDA
- Current rule does not clearly address the anatomic pathology arena incorporating different and complex methods that will require a different set of experts to evaluate (artificial intelligence / machine learning [AI / ML], liquid biopsy, multiplex assays, multianalyte tests incorporating complex algorithms and whole genome sequencing)
- Among the recommendations made
- Harmonizing regulations for LDT and IVD in which clinical validation is considered with the laboratory regulation setting
- Convene a special advisory panel on digital pathology, which is not just a device but is transforming practice
- College of American Pathologists response (CAP: Re: FDA Proposed Rule, "Medical Devices; Laboratory Developed Tests" - Docket No. FDA-2023-N-2177 [Accessed 4 March 2024])
International regulation of LDTs
European Union (EU) (European Commission: Questions and Answers - Stronger Rules for Placing Medical Tests on the Market [Accessed 18 March 2024], Ther Innov Regul Sci 2022;56:47)
Canada (CMAJ 2020;192:E1166, CMAJ 2019;191:E1067)
- Regulation on in vitro diagnostic medical devices (IVD regulation)
- Entered into force May 2017 and applicable on May 26, 2022 with staggered grace periods extending to May 26, 2025 for high risk IVDs and May 26, 2027 for lower risk IVDs
- Updates first EU level rules for placing IVDs on the market in 1998
- Response to substantial technological and scientific progress over the last 20 years
- To improve the safety of IVDs
- To modernize regulations and the sector
- Ensure a high level of public health and safety
- Ensure smooth operation of a single market for these devices
- IVD Regulation (EU-IVDR) - EU Regulation 2017/746 on in vitro diagnostic medical devices
- Clear obligations for economic operators
- Risk based classification system with 4 risk classes of IVDs
- Class A: low individual risk and low public health risk (e.g., buffer solutions)
- Class B: moderate individual risk or low public health risk (e.g., pregnancy home tests)
- Class C: high individual risk or moderate public health risk (e.g., cancer tests)
- Class D: high individual risk and high public health risk (e.g., hepatitis and HIV tests)
- Stricter control of high risk IVD with new premarket scrutiny mechanism
- Oversight by independent third party conformity assessment bodies (notified bodies)
- Improved transparency through comprehensive EU database
- Traceability system based on unique device identifier
- Reinforced rules on clinical evidence and performance evaluation
- Strengthened postmarket surveillance requirements
- Improved coordination mechanisms among EU countries on vigilance and surveillance
- Specific regime for devices manufactured and used in the same health institution (in house devices or LDT)
- Not marketed or transferred to other legal entities
- Not CE marked
- General safety requirements must be met
- Requirements of health institution using an LDT
- Must have an appropriate quality management system
- Must comply with international standards setting out the quality and competency requirements of the laboratory (EN ISO 15189) or other national provisions
- Must justify that the target patient group's specific needs cannot be met by an equivalent IVD available on the market
Canada (CMAJ 2020;192:E1166, CMAJ 2019;191:E1067)
- Health Canada, a federal institution, is responsible for
- Helping Canadians maintain and improve health
- Ensuring high quality health services are accessible
- Reducing health risks
- Federal Food and Drugs Act
- Oversees IVD devices under Medical Devices Regulation
- Has oversight of diagnostics developed as test kits only
- Does not address LDT
- Other regulation of laboratory testing is overseen by public and private entities with oversight from provincial governments, nongovernmental organizations and professional societies
- No single entity is formally responsible across Canada for independent evaluation of LDT or assessment of development, validity and adverse effects
- Standards Council of Canada, Canadian Standards Association Technical Committee Z252.11 for Lab Developed Tests, April 2018
- Voluntary standard
- In concert with Medical Devices Bureau of Health Canada and laboratory partners Siemens and Roche
- Provides high level guidelines for test validation
- Distinguishes testing performed for clinical use versus research
FDA Final Rule on LDTs
Definitions
Essence of the FDA final rule (Federal Register: Food and Drug Administration - 21 CFR Part 809 [Docket No. FDA-2023-N-2177] [Accessed 10 June 2024])
- Device master record (DMR): the definitive instruction manual in the compliant manufacture of a device, an all encompassing collection of documents and records required by regulation
- Corrective and Preventative Action (CAPA): a process used to address and prevent quality problems
Essence of the FDA final rule (Federal Register: Food and Drug Administration - 21 CFR Part 809 [Docket No. FDA-2023-N-2177] [Accessed 10 June 2024])
- The FDA issued a final rule on May 6, 2024 to amend its regulations to make explicit that IVDs are devices under the Federal Food and Drug Cosmetic Act (FD&C Act), including when the manufacturer of the IVD is a laboratory
- The remainder of the Final Rule document is the proposed draft guidance for
- Schedule for implementation of the rule
- Description of the application of the rule
- Exceptions to the rule where enforcement discretion will continue
- FDA may alter its draft guidance at any time
- Proposed draft schedule for implementation (FDA: FDA’s Final Rule Including a Phaseout Policy Regarding Laboratory Developed Tests [Accessed 10 June 2024]) (see Figure 2)
- Unless specifically exempt, all LDTs will be required to meet the reporting and performance requirements for stages 1 and 2
- A subset of LDTs will be required to meet the requirements for subsequent stages
- Specific FDA required reporting / documentation elements that differ from CLIA required reporting
- Design controls: a structured approach that manufacturers must adhere to throughout the device development lifecycle; this typically follows a traditional waterfall model
- Requirements for a device are developed / identified
- Device is designed
- Design evaluated, produced and manufactured
- Iterative feedback at each stage
- Purchasing controls: a requirement that manufacturers develop and maintain procedures to ensure that all purchased or otherwise received products and services adhere to specific requirements
- Acceptance criteria: this refers to the numerical limits, ranges or other criteria for tests that are used for making a decision to accept or reject a unit, lot or batch of a test or its products
- The activities required in the DMR are completed
- Associated data and documentation reviewed
- The release is authorized by signature of designated individual
- The authorization is dated
- Records required in DMR are complete and maintained
- CAPA: a specific system for evaluating any issues or complaint, with specific documentation and reporting requirements (FDA: Corrective and Preventive Actions (CAPA) [Accessed 10 June 2024])
- Design controls: a structured approach that manufacturers must adhere to throughout the device development lifecycle; this typically follows a traditional waterfall model
- The FDA may take action against any LDT that it determines is dangerous or too high risk to the public
- Continued enforcement discretion includes the following categories of tests
- 1976 type LDTs
- Use of manual techniques performed by laboratory personnel with specialized expertise
- Use of components legally marketed for clinical use
- Design, manufacture and use within a single CLIA certified laboratory that meets CLIA high complexity testing requirements
- Certain human leukocyte antigen tests for transplantation
- Designed, manufactured and used within a single CLIA certified laboratory
- Used for organ, stem cell and tissue transplantation
- Forensic tests
- Department of Defense and Veterans Health Affair LDTs
- LDTs approved by New York State's Clinical Laboratory Evaluation Program (CLEP)
- Certain modified versions of another manufacturer’s 510(k) cleared or de novo authorized test
- Laboratory certified under CLIA
- Modification follows design controls and other quality system requirements of FDA
- Does not significantly affect the safety or effectiveness of the test
- Does not constitute a major change or modification in the intended use of the test
- Modified test is performed only in the laboratory making the modification
- Certain LDTs for unmet needs
- Manufactured and performed by a laboratory integrated within a healthcare system to meet an unmet need of patients receiving care within that same healthcare system
- Once an FDA approved test is available for the same indication, the LDT may not be used, unless the LDT is not available to that patient population at that location
- Currently marketed IVDs offered as LDTs
- Were being offered prior to the May 6, 2024 issuance of the final rule
- Are not altered / modified after that date
- Note that some limited alterations may be permitted
- Certain nonmolecular antisera LDTs for rare red blood cell antigens for transfusion compatibility
- 1976 type LDTs
- Questions yet to be clarified in this guidance include
- What is the definition of a high risk LDT that will require a laboratory to go beyond the first 2 stages of the implementation?
- What modifications to a manufacturer’s test or LDT would require additional submission of data as a new LDT?
- What are unmet patient needs?
- How is “within a healthcare system” defined? Is it the same corporation or could it be an independent lab contracted to that healthcare system?
- Will data previously collected during the validation of an LDT prior to May 6, 2024 be accepted as part of the FDA data submission?
- What will the fee structure be for?
- Laboratories registering new LDTs that do not require premarket approval or 510(k) clearance?
- Laboratories only offering LDTs where continued enforcement discretion will be followed?
- Implementation of the FDA Final Rule on LDTs may still be impacted by
- Legislation
- Litigation
- Federal intervention
Additional references
Board review style question #1
Which of the following is required by both the U.S. Food and Drug Administration (FDA) and Clinical Laboratory Improvement Act (CLIA) in the oversight of laboratory testing?
- Demonstration of diagnostic effectiveness
- Demonstration of patient safety
- Requirement for analytic validity
- Requirement for clinical validity
Board review style answer #1
C. Requirement for analytic validity. Analytic validity is required by both the FDA and CLIA before a test may be put into use; however, the FDA requires large scale population studies and CLIA allows analytic validity to be performed on the smallest number of patients that can be used for statistical significance. Answers A, B and D are incorrect because these are mandatory only under FDA regulatory oversight of medical testing and not CLIA.
Comment Here
Reference: Laboratory developed tests
Comment Here
Reference: Laboratory developed tests
Board review style question #2
Which of the following characteristics describes the original (1976) definition of laboratory developed tests (LDT)?
- Are based on manual methods requiring scientific expertise
- Are used by reference laboratories across the U.S.
- Require complex and proprietary algorithms for interpretation
- Widely screen for disease
Board review style answer #2
A. Are based on manual methods requiring scientific expertise. The original definition of LDT in 1976 included primarily manual methods of testing, performed in a single high complexity CLIA certified laboratory for the local population, in small volume and to diagnose rare diseases. Answers B, C and D are incorrect because they describe some of the changes that have occurred in LDT processes over the years. These changes have led to the FDA seeking to establish greater oversight of these tests.
Comment Here
Reference: Laboratory developed tests
Comment Here
Reference: Laboratory developed tests