Table of Contents
Definition / general | Essential features | CPT coding | Sites | Case reports | Cytology description | Cytology images | Sample pathology report | Differential diagnosis | Additional references | Board review style question #1 | Board review style answer #1 | Board review style question #2 | Board review style answer #2Cite this page: Ferreira JE, Chen-Yost HI. Atypical. PathologyOutlines.com website. https://www.pathologyoutlines.com/topic/cytopathologylungatypical.html. Accessed April 1st, 2025.
Definition / general
- Specimens categorized as atypical exhibit cytomorphological features that may be associated with benign or reactive conditions but the nuclear, architectural and background features surpass what is typically expected for reactive or benign lesions
- Features are insufficient in either quantity or quality to definitively classify the specimen as benign, suspicious for malignancy or malignant
Essential features
- World Health Organization (WHO) Reporting System for Lung Cytopathology is the recommended system for reporting results (Acta Cytol 2023;67:80)
- Findings that may result in an atypical categorization
- Reactive or reparative changes due to inflammation or infection
- Atypia following radiotherapy or chemotherapy, squamous metaplasia, hyperplasia (such as goblet cell, reserve cell or reactive pneumocyte hyperplasia)
- Background debris is indicative of a potential neoplastic process, among others
- Rate of malignancy is reported to be in the range of 22 - 62% (Layfield: The Papanicolaou Society of Cytopathology System for Reporting Respiratory Cytology, 1st Edition, 2018, Diagn Cytopathol 2015;43:892, Diagn Cytopathol 2018;46:725)
- Clinical and radiographic correlation is recommended before rendering a categorization as atypical (Cytopathology 2016;27:149)
- Atypical category designation in respiratory cytology is suggestive of a potential malignancy but lacks the quantity or definitive features required to confirm a malignant or benign diagnosis
CPT coding
Sites
- Lung, bronchus
- Lung, parenchyma
Case reports
- 60 year old woman with a 2.5 cm solitary pulmonary lesion (Diagn Cytopathol 2024;52:589)
- 70 year old woman with suspected left upper lobe of lung neoplasm and enlarged left hilar lymph node (Diagn Cytopathol 2022;50:172)
- 70 year old man with hemoptysis and bilateral pulmonary infiltrates (Respir Care 2004;49:186)
Cytology description
Reactive causes for an atypical appearance of respiratory cells
Mimickers of adenocarcinoma
Other
- Treatment effect from radiation or chemotherapy (Diagn Cytopathol 1988;4:9, Pathologica 1991;83:317)
- Clinical history is beneficial for this diagnosis
- Nuclei
- Nuclear irregularity, cytomegaly, often low N:C ratio
- Large nucleoli
- Smudgy chromatin pattern
- Cytoplasm
- Abundant cytoplasm
- Cytoplasmic vacuolization
- Infective, inflammatory or alveolar damage (Indian J Chest Dis Allied Sci 2008;50:33, Acta Cytol 2000;44:640, Diagn Cytopathol 2022;50:E107, Diagn Cytopathol 2014;42:993)
- Useful to maintain a high index of suspicion in the appropriate clinical setting
- Nuclei
- Nuclear enlargement or hyperchromasia
- Nuclear crowding / overlap
- Prominent nucleoli
- Background acute inflammation, debris, extracellular material
- Necrotizing granulomas
- Squamous metaplasia (Diagn Cytopathol 2011;39:144, Arch Pathol Lab Med 2007;131:1700)
- Oval to round squamous cells
- Hyperchromatic nuclei
- With or without orangeophilic cytoplasm
- Variable N:C ratio (often low)
- With or without background debris
- Can mimic squamous cell carcinoma
Mimickers of adenocarcinoma
- Goblet cell metaplasia (Acta Cytol 2022;66:532)
- Cohesive group of cells
- Intracytoplasmic mucin
- Lack of nuclear membrane irregularities
- Can mimic mucinous adenocarcinoma
- Reserve cell hyperplasia (Acta Cytol 2022;66:532)
- Cohesive cellular arrangement
- Hyperchromasia
- Increased N:C ratio
- Periphery with ciliated cells
- Often seen in bronchial brushing / washing specimens
- Pulmonary macrophages (Trends Mol Med 2016;22:303)
- Round to oval cells
- Moderate and vacuolated cytoplasm
- Round, elongated or indented nucleus
- With or without pigmented inclusions (anthracotic or hemosiderin laden); finer than melanin pigment
- Hyperplastic and reactive pneumocytes (Arch Pathol Lab Med 2020;144:443)
- Single or in clustered arrangements
- Nuclear enlargement, with or without contour irregularity
- Prominent nucleoli
- Vesicular chromatin
- Variably dense to vacuolated cytoplasm
- Can mimic carcinoma due to nuclear atypia
Other
- Spindle cell lesions (Ann Diagn Pathol 2001;5:216)
- Ancillary testing is important for final categorization
- Differential diagnosis is broad and ranges from benign to malignant
- Correlate with clinicoradiographic impressions
Cytology images
Sample pathology report
- Right lower lobe of lung, endobronchial ultrasound guided FNAB:
- Diagnostic summary
- Category: Atypical
- Diagnosis: Atypical epithelial cells and nonnecrotizing granulomas are present (see comment)
- Microscopic description: The aspirate smears exhibit moderate cellularity, primarily comprised of granulomatous inflammation without evidence of necrosis. An isolated atypical epithelial cell cluster is observed.
- Comment: The finding of an isolated epithelial cell cluster is limited and nonspecific. Correlation with clinical and radiographic findings, along with follow up results of concurrent surgical biopsy, is recommended.
- Diagnostic summary
- Right upper lobe of lung, endobronchial ultrasound guided FNAB:
- Diagnostic summary
- Category: Atypical
- Diagnosis: Atypical epithelial cells are present (see comment)
- Comment: Though there are scattered atypical cells on the aspirate smears, these are too few for further characterization. The corresponding cell block is paucicellular precluding further assessment. Follow up and repeat sampling should be considered if clinically indicated.
- Diagnostic summary
- Left lower lobe of lung, endobronchial ultrasound guided FNAB:
- Diagnostic summary
- Category: Atypical
- Diagnosis: Atypical epithelioid cells are present (see comment)
- Microscopic description: Cytologic preparations reveal a scattered population of atypical epithelioid cells in a background of granulomatous inflammation.
- Comment: Immunohistochemical stains performed on cell block material demonstrate that the cells of interest are positive for AE1 / AE3, with a subset showing positivity for TTF1. Diagnostic considerations include an underlying neoplasm versus a reactive process; however, the paucity of these atypical cells, their lack of definitive malignant features and the prominent inflammatory background preclude a more specific diagnosis. Repeat sampling and further clinical and radiographic correlation are advised.
- Diagnostic summary
Differential diagnosis
- Nondiagnostic lung cytology:
- Material is insufficient to render a diagnosis (e.g., acellular specimen)
- Cells sampled do not accurately reflect a targeted lesion
- Benign lung cytology:
- Specimen has unequivocally benign cytopathology features
- Benign and reactive bronchial elements
- Benign neoplasm
- Presence of infection (fungal, parasitic, bacterial, etc.)
- Specimen has unequivocally benign cytopathology features
- Suspicious cytology:
- Degree of cellular atypia and other cytomorphologic features are indicative of malignancy (suspicious)
- Quantity of cytology material is insufficient for a positive diagnosis or clinical history precludes a malignant diagnosis
- Example: atypical squamous cells in background of necrosis (abscess versus necrotic squamous cell carcinoma)
- Positive lung cytology:
- Degree of cellular atypia and other cytomorphologic features unequivocally malignant
- Quantity of specimen is enough to render a positive diagnosis
Additional references
Board review style question #1
Which of the following is most likely to warrant an atypical category designation when reporting respiratory cytology specimens?
- Abundant neutrophilic inflammation
- Lymphocytic proliferation
- Pulmonary macrophages
- Reactive changes after radiation therapy
- Unremarkable bronchiolar epithelial cells
Board review style answer #1
D. Reactive changes after radiation therapy. Postradiation therapy, respiratory cells can develop abnormal features that mimic malignancy such as enlarged nuclei with irregularity and prominent nucleoli. However, these cells often have other reassuring morphologic features such as a low N:C ratio, smudgy chromatin pattern and cytoplasmic vacuolization. Overall, these cases are best put in the atypical category, especially if there is a lack of clinical history of radiation therapy.
Answers C and E are incorrect because they are typically found in benign respiratory samples.
Answers A and B are incorrect because the atypical category is reserved for cases that suggest potential malignancy but lack the quantity or definitive features required to confirm a malignant or benign diagnosis.
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Reference: Lung - Atypical
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Reference: Lung - Atypical
Board review style question #2
Which of the following is a highly recommended first step to take before categorizing the cytologic respiratory specimen shown above as atypical?
- Assessment by flow cytometry
- Correlation of clinical and radiographic findings
- Performing special stains for infectious organisms
- Perform molecular testing
- Repeat sampling
Board review style answer #2
B. Correlation of clinical and radiographic findings. Clinical and radiographic findings should be reviewed before categorizing a specimen as atypical. This ensures that cytologic features are interpreted in the right clinical and radiographic context. Other testing can then be performed if warranted. Answer A is incorrect because while flow cytometry can provide information about cellular populations, it is not the first step in determining whether a specimen is atypical. Answer C is incorrect because the cytologic features should be correlated with clinical and radiographic findings prior to ordering special stains to determine whether an infection is a likely consideration. Answer D is incorrect because It is not the first step in categorizing a specimen as atypical, as molecular testing is specific to certain genetic alterations. Answer E is incorrect because repeat sampling is only necessary when the initial specimen is inadequate or nondiagnostic; therefore, the current specimen should be assessed first in the context of clinical and radiographic findings.
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Reference: Lung - Atypical
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Reference: Lung - Atypical