Chemistry, toxicology & urinalysis

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Hepatitis C testing


Board of reviewers: Jieli (Shirley) Li, M.D., Ph.D.
Editorial Board Member: Melissa R. George, D.O.
Rongrong Huang, Ph.D.

Last author update: 26 June 2024
Last staff update: 26 June 2024

Copyright: 2024, PathologyOutlines.com, Inc.

PubMed Search: Hepatitis C testing

Rongrong Huang, Ph.D.
Cite this page: Huang R. Hepatitis C testing. PathologyOutlines.com website. https://www.pathologyoutlines.com/topic/chemistryhepatitisC.html. Accessed December 24th, 2024.
Definition / general
  • Hepatitis C testing involves measurement of hepatitis C virus (HCV) specific antibodies and HCV RNA, which can be used to screen, diagnose and monitor HCV infections, as well as guide direct acting HCV antiviral therapy
  • A combination of HCV serology and nucleic acid test (NAT) results can help determine whether a patient has current or past HCV infection
    • In addition, quantitative NAT, genotyping assays and sequencing based drug resistance tests are important for predicting treatment response and tailoring therapy
Essential features
  • Clinical manifestation of acute HCV infection is mostly asymptomatic and many patients develop chronic infection without being recognized (up to 85%)
    • Symptomatic acute hepatitis is uncommon and usually nonspecific
    • Chronic HCV infection is defined as persistence of HCV RNA for more than 6 months; RNA and alanine transaminase (ALT) levels fluctuate during the disease course of chronic HCV infection
  • There is only 1 clinically relevant HCV serology test, anti-HCV, which detects total HCV antibodies
    • Presence of HCV antibody indicates HCV infection but cannot differentiate current infection versus resolved past infection
  • Diagnosis of current HCV infection requires detection of both antibody and RNA
    • Testing algorithm starts with HCV antibody test (anti-HCV), followed by a reflex NAT for HCV RNA if anti-HCV test is reactive
  • Establishing the baseline viremia by quantitative NAT is recommended before initiating antiviral therapy
    • Viral load is also measured to monitor treatment response and determine sustained virologic response
  • HCV genotyping and viral drug resistance mutation tests remain clinically significant in tailoring therapy for patients ineligible for simplified HCV treatment
Terminology
  • Hepatitis C virus (HCV)
  • Hepatitis C antibody (anti-HCV)
  • Acute hepatitis C
  • Chronic hepatitis C
  • Nucleic acid testing (NAT)
  • Sustained virologic response (SVR)
ICD coding
  • ICD-10
    • B17.1 - acute hepatitis C
    • B18.2 - chronic viral hepatitis C
    • B19.2 - unspecified viral hepatitis C
  • ICD-11
Pathophysiology
  • HCV is an enveloped, single stranded RNA (ss-RNA) virus of the Flaviviridae family
    • Liver is the major organ for the HCV replication, where HCV enters hepatocytes via specific receptors, including CD81
    • Extrahepatic viral replication is found primarily in peripheral blood lymphocytes (Genes Immun 2019;20:436)
  • Once inside the hepatocyte cytoplasm, the viral RNA is released and used for polyprotein translation, RNA replication and virion assembly
    • Primary translation product is a large polyprotein consisting of 10 viral proteins of HCV: 3 virion structural proteins (core protein, envelop proteins E1 and E2), a membrane protein (p7) and 6 nonstructure proteins (NS2, 3, 4A,4B, 5A, 5B)
    • Adaptive mutations in these NS proteins play important roles in viral replication (Nature 2005;436:933)
  • HCV replicates rapidly and possesses high genomic heterogeneity, similar to that of human immunodeficiency virus (HIV)
  • Host immune system is critical in limiting viral replication, where type 1 cytokine response was found to be associated with clearance of acute infection
    • Failure in effective control of viral replication leads to persistent infection
    • The majority of HCV infections progress from acute to chronic infection, with only about 10 - 15% of acute HCV infections resolving spontaneously (Infect Dis Clin North Am 2000;14:633)
  • HCV is considered noncytopathic, where both hepatotropism and lymphotropism of the virus are believed to be immune mediated
    • Hepatic tissue destruction leads to increased risk of liver disease including cirrhosis and hepatocellular carcinoma (HCC), while viral replication within B cells explains extrahepatic manifestations of cryoglobulinemic vasculitis and chronic inflammation seen in some patients (Genes Immun 2019;20:436)
Clinical features
  • Overview
    • HCV is transmitted through contact with infected blood or body fluids, such as during pregnancy or delivery, injection drug use or needle stick, sexual intercourse or transplant
    • Unlike HBV infection, immunity from prior HCV infection does not protect one from reinfection
      • On the other hand, risk of fulminant hepatitis due to HCV infection is rare with few well documented cases (Dig Dis Sci 2023;68:304)
    • Clinical manifestation of acute HCV infection is mostly asymptomatic and many patients develop chronic infection without being recognized (up to 85%)
      • Symptomatic acute hepatitis is uncommon and usually nonspecific (i.e., fatigue, nausea, jaundice and abdominal pain) (Am Fam Physician 2021;104:626)
    • Disease spectrum of HCV infection varies significantly from patient to patient, even within those infected with similar HCV genotypes
  • Acute HCV infection
    • Incubation period of HCV can range from 2 to 30 weeks, with an estimation of 7 weeks
      • In symptomatic patients, symptom onset typically lasts 2 - 12 weeks after exposure
      • HCV antibody is usually not detectable until after the development of clinical symptoms, e.g., 4 - 10 weeks after exposure and seroconversion can be delayed in some patients for up to 6 months
      • Once developed, HCV antibody can persist for years regardless of disease course (Infect Dis Clin North Am 2000;14:633)
    • HCV RNA can become detectable within a week or 2 of exposure but can also be transiently negative during acute HCV infection
      • Viral fluctuation or low viral load may be indicative of acute HCV infection
    • Serum alanine transaminase (ALT) fluctuates during acute HCV infection, which may be normal at times with a peak level around 10 - 20 times of the upper limit of normal range
      • Normalization of serum ALT happens in about 40% patients but does not reflect viral clearance (Hepatology 2020;71:686)
  • Chronic HCV infection
    • Chronic HCV infection is defined as persistence of HCV RNA for more than 6 months
    • Hepatic disease outcome of patients with chronic HCV infection includes chronic hepatitis, fibrosis, cirrhosis, liver failure and HCC
      • More than half of patients with chronic HCV infection also develop extrahepatic manifestations, including cryoglobulinemia, vasculitis, membranoproliferative glomerulonephritis, insulin resistant diabetes, cardiovascular disease and extrahepatic cancers (Genes Immun 2019;20:436)
    • Serum ALT fluctuates throughout the course of chronic HCV infection, with mild elevation in the majority and normal levels can be seen in up to 33% of patients (Infect Dis Clin North Am 2000;14:633)
    • HCV infection is considered cured with achievement of sustained virologic response, which refers to having nondetectable HCV RNA for 12 weeks after completion of direct acting antiviral (DAA) therapy (Am Fam Physician 2021;104:626)
Test indications
  • Diagnostic or serologic window period (World Health Organization: WHO Guidelines on Hepatitis B and C Testing [Accessed 26 June 2024])
    • HCV RNA and core antigen can be detected as early as 1 - 2 weeks after infection
    • With the current anti-HCV assays, the seroconversion (serologic window period) occurs ~6 - 12 weeks after the exposure to HCV
    • Despite the shorter window period, using HCV RNA to determine HCV infection is limited to blood and organ donation screening
  • Diagnosis of current HCV infection requires detection of both antibody and RNA
  • Establishing the baseline viremia by quantitative NAT is recommended before initiating antiviral therapy
    • Viral load is also measured to monitor treatment response and determine sustained virologic response
  • With pangenotypic direct acting antiviral (DAA) therapy available, universal pretreatment genotyping is no longer required
    • Pretreatment genotype test is indicated in patients with prior treatment failure or in patients with cirrhosis or those otherwise ineligible for simplified HCV treatment (Hepatology 2020;71:686)
  • Testing for viral resistance mutations is indicated in patients with cirrhosis and infected with certain genotypes (e.g., HCV genotype 3 NS5A drug resistance testing), which can affect the regimen choice and predict therapy response (Ann Intern Med 2020;173:ITC33)
  • Centers for Disease Control and Prevention (CDC) has recently updated testing recommendations for HCV infection for both adults and perinatally exposed infants and children
    • CDC recommendations for hepatitis C screening among adults - U.S., 2020 (MMWR Recomm Rep 2020;69:1)
      • Universal HCV screening: all adults; all pregnant people
      • One time hepatitis C antibody testing regardless of age or setting prevalence among people with recognized conditions or exposures
      • Routine periodic testing for people with ongoing risk factors
      • Any person who requests HCV antibody testing
    • CDC recommendations for hepatitis C testing among perinatally exposed infants and children - U.S., 2023 (MMWR Recomm Rep 2023;72:1)
      • Test all infants and children born to pregnant persons with current or probable HCV infection
      • Test all perinatally exposed children
        • Aged 2 - 6 months with a NAT for HCV RNA
        • Aged 7 - 17 months with a NAT for HCV RNA
        • Aged ≥ 18 months with HCV antibody test followed by a reflex NAT for HCV RNA
        • Perinatally exposed infants and children aged ≥ 2 months with an undetectable HCV RNA result do not require further follow up unless clinically warranted
Laboratory
  • Methodology
    • Chemiluminescent immunoassay (CLIA) or electrochemiluminescent immunoassay (ECLIA) are the most common methods for hepatitis C serology testing performed on automation analyzers (Clarke: Contemporary Practice in Clinical Chemistry, 4th Edition, 2020)
    • Polymerase chain reaction (PCR) and reverse transcriptase PCR (RT-PCR) are the most common molecular methods to detect HCV RNA, including qualitative and quantitative NAT assays
    • Direct sequencing of a specific PCR amplified portion of the viral genome is the most definitive method for HCV genotyping
    • Sequencing of the NS proteins using PCR or RT-PCR method has been used to detect HCV viral drug resistance mutations
  • HCV serology test
    • There is only 1 HCV serology test clinically offered in the U.S., anti-HCV, which detects total HCV antibodies
      • Presence of HCV antibody indicates HCV infection but cannot differentiate current infection versus resolved past infection
    • HCV core antigen test, currently available only outside of the U.S., is another HCV serology test that can be used as a more cost effective alternative to HCV RNA NAT
      • Clinical utility of HCV core antigen for screening or diagnosis of HCV infection is limited because it is less sensitive compared to HCV RNA NAT assays and may become undetectable after seroconversion in some patients with current HCV infection (J Hepatol 2005;42:S108)
    • Current generation of HCV serology testing is highly sensitive and specific
      • However, when used in patient populations with low disease prevalence, the positive predictive value may be compromised
      • This is especially true with near cut off test results
      • Because immunoassay design varies significantly (e.g., antibody selection, cutoff setup, reagent formulation), testing with a different assay can be considered if distinction between true positive and biologic false positive anti-HCV result is desired
    • A point of care, CLIA waived, rapid HCV antibody test has been made available using the lateral flow immunoassay technology, which provides comparable performance to enzyme immunoassays
    • Rarely, HCV serology test results may be misleading in immunocompromised patients who failed to produce sufficient antibodies
  • HCV molecular test
    • Various HCV molecular tests are available for clinical use, including qualitative NAT assays for detection of virus presence, quantitative NAT assays for measurement of viremia (viral load), sequencing assays for HCV RNA genotyping and detection of drug resistance mutations
    • Presence of HCV RNA alone does not distinguish between acute and chronic infection
      • Transiently negative HCV RNA can be seen in acute infection, while low or fluctuating viral load is indicative of acute infection
    • Limit of detection (LoD) and lower limit of quantitation (LLoQ) are important for NAT assays as the definition of cure relies on a not detected result at the end of the treatment cycle
      • Current recommendation considers an HCV NAT assay as appropriate with an LLoQ of 25 IU/mL and LoD of 15 IU/mL, at the least (Hepatology 2020;71:686)
    • HCV genotyping is recommended before therapy initiation for patients with a prior treatment failure or for those ineligible for simplified HCV treatment, to guide DAA regimen selection and to determine therapy duration (Ann Intern Med 2020;173:ITC33)
    • Because the DAA regimens target HCV NS proteins, including NS3, NS4A, NS5A and NS5B, HCV drug resistance mutation tests based on sequencing of NS proteins are important for the identification of resistance associated substitutions (RASs) (Ann Intern Med 2020;173:ITC33)
      • When tailored DAA regimen is required, a combination of genotype and RASs information together with host factors are used to determine treatment plan
Hepatitis C testing results interpretation (adapted from MMWR Morb Mortal Wkly Rep 2013;62:362)
Anti-HCV HCV RNA Result interpretation
Nonreactive Not indicated
(unless recent
exposure suspected)
Report nonreactive HCV antibody
Reactive Not performed Presumptive HCV infection
  • Consistent with current infection
  • Or past infection that has resolved
  • Or biologic false positivity for HCV antibody
Reactive Detected Current HCV infection
Reactive Not detected No current HCV infection
  • If distinction between true positive and biologic false positive anti-HCV result is
    desired, consider testing with another HCV antibody assay if repeat positive
    with the initial test
  • Repeat HCV RNA testing can be considered if there is strong clinical indication
    or if there is a concern regarding specimen quality
Board review style question #1
Which of the following is the most appropriate test for the diagnosis of current hepatitis C virus (HCV) infection?

  1. Anti-HCV antibody
  2. Anti-HCV antibody with reflex to HCV RNA NAT
  3. HCV core antigen
  4. HCV genotyping
  5. HCV RNA NAT
Board review style answer #1
B. Anti-HCV antibody and HCV RNA NAT. The diagnosis of current HCV infection requires both antibody and RNA tests. Answers A and E are incorrect because neither HCV antibody nor HCV RNA alone is sufficient for diagnosis of current HCV infection. Also, it is clinically very uncommon to have positive results with the NAT test alone without subsequent RNA detection, even in cases with acute HCV infection. Answer C is incorrect because HCV core antigen is less sensitive than HCV RNA and may become undetectable after seroconversion in some patients with current HCV infection. Currently, there is no FDA approved HCV core antigen assay offered in the U.S. Answer D is incorrect because a genotyping test is used for pretreatment assessment in certain patients diagnosed with a current HCV infection.

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Reference: Hepatitis C testing
Board review style question #2
In a patient that does not have recent exposure or a known risk for hepatitis C virus (HCV) infection, what is the most likely interpretation of the hepatitis C testing results below and what is the appropriate action to take?

  • Anti-HCV antibody: reactive
  • HCV RNA: not detected

  1. Acute HCV infection; link patient to medical care and treatment
  2. Chronic HCV infection; link patient to medical care and treatment
  3. False negative HCV RNA result; repeat HCV RNA testing
  4. No current HCV infection; no further action is required
Board review style answer #2
D. No current HCV infection; no further action is required. A negative RNA result indicates no current HCV infection. A reactive HCV antibody result could be due to past infection (true positive) or biological false positive. Answers A and C are incorrect because the clinical indication is low for a transiently negative HCV RNA during acute infection or a false negative HCV RNA result. Answer B is incorrect because HCV RNA would be positive in chronic HCV infection.

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Reference: Hepatitis C testing
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